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NicheNet_DBinfo.txt
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112 lines (112 loc) · 10.1 KB
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Dataset-id Accesion Stimulation Cell Cell type Organism Type Timepoints
GSE18648-BMP4 GSE18648 Bmp4 Intervertebral disc fibrocartilage Mouse Differential expression 0-8
GSE18648-TGFB1 Tgfb1 Intervertebral disc fibrocartilage Mouse Differential expression 0-8
GSE23675-NODAL GSE23675 Nodal Extraembryonic endoderm stem cells stem cell Mouse Differential expression 0-96
GSE46903-IL4(1) GSE46903 IL4 Macrophage cultered in presence of GM-CSF immune Human Differential expression 0-72
GSE46903-TNF TNF Macrophage cultered in presence of GM-CSF immune Human Differential expression 0-72
GSE46903-IFNG(1) IFNG Macrophage cultered in presence of GM-CSF immune Human Differential expression 0-72
GSE46903-IFNB1 IFNB1 Macrophage cultered in presence of GM-CSF immune Human Differential expression 0-72
GSE46903-IL13 IL13 Macrophage cultered in presence of GM-CSF immune Human Differential expression 0-72
GSE46903-IL4(2) IL4 Macrophage cultered in presence of GM-CSF immune Human Time series 0-6-12-24
GSE46903-IFNG(2) IFNG Macrophage cultered in presence of GM-CSF immune Human Time series 0-6-12-24
GSE46903-IFNG+TNF IFNG + TNF Macrophage cultered in presence of GM-CSF Human Differential expression 0-72
GSE5542-IFNG GSE5542 IFNG A549 cell (lung adenocarcinoma cell line) carcinoma Human Time series 0 -6-24
GSE71404-hHGF GSE71404 HGF PC3M cell (prostate adenocarcinoma cell line) carcinoma Human Time series 0-8-16-32
GSE71404-mHGF Hgf PC3M cell (prostate adenocarcinoma cell line) carcinoma Human Time series 0-8-16-32
GSE71404-TAC1 TAC1 PC3M cell (prostate adenocarcinoma cell line) carcinoma Human Time series 0-8-16-32
GSE9977-IFNG GSE9977 Ifng NIH-3T3 fibroblast cells fibroblast Mouse Time series 0 – 1-3
GSE9977-IFNA1 Ifna1 NIH-3T3 fibroblast cells fibroblast Mouse Time series 0 – 1-3
GSE6653-TGFB1 GSE6653 TGFB1 Immortalized ovarian surface epithelial cells epithelial Human Time series 0-3-6-12
GSE84500-BMP2 GSE84500 BMP2 Mesenchymal stem cells stem cell Human Time series 0-24-48
GSE47542-IL4 GSE47542 IL4 IMR-90 lung fibroblast cells fibroblast Human Differential expression 0-24
GSE47542-IL13 IL13 IMR-90 lung fibroblast cells fibroblast Human Differential expression 0-24
GSE47542-TNF(1) TNF (plastic substrate) IMR-90 lung fibroblast cells fibroblast Human Differential expression 0-24
GSE47542-TNF(2) TNF (matrigel substrate) IMR-90 lung fibroblast cells fibroblast Human Differential expression 0-24
GSE27195-CNTF GSE27195 Cntf retinal glial cells glial Mouse Differential expression 0-24
GSE7216-IL19 GSE7216 IL19 Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-IL20 IL20 Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-IL22 IL22 Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-IL24 IL24 Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-IL1B IL1B Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-FGF7 FGF7 Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE7216-IFNG IFNG Epidermal keratinocytes keratinocyte Human Differential expression 0-96
GSE44732-IL27 GSE44732 IL27 Monocyte-derived Dendritic Cells immune Human Differential expression 0-48
GSE59237-TSLP GSE59237 TSLP Blood Dendritic cells immune Human Differential expression 0-6
GSE15062-TNF GSE15062 Tnf Aortic Smooth Muscle Cells smooth muscle cell Mouse Time series 0-2-6-24
GSE15062-TNF+LTB Tnf + Ltb Aortic Smooth Muscle Cells smooth muscle cell Mouse Differential expression 0-24
GSE46564-PDGFB GSE46564 Pdgfb Pericytes pericyte Mouse Differential expression 0-120
GSE74847-TNFSF11 GSE74847 Tnfsf11 RAW264.7 (macrophage cell line) immune Mouse Differential expression 0-48
GSE40017-CXCL12(1) GSE40017 CXCL12 (CXCR4 OE) SW480 (colon cancer cell line) carcinoma Human Time series 0- 3-12
GSE40017-CXCL12(2) CXCL12 (ACKR3 OE) SW480 (colon cancer cell line) carcinoma Human Time series 0- 3-12
GSE40017-CXCL12(3) CXCL12 (CXCR4 + ACKR3 OE) SW480 (colon cancer cell line) carcinoma Human Time series 0- 3-12
GSE27467-GNRH1 GSE27467 GNRH1 SLC60 (embryonic kidney cell line) epithelial Human Time series 0-1-8-24
GSE28569-TGFB1 GSE28569 TGFB1 MCF10A cells (fibroblast cell line) fibroblast Human Differential expression 0-72
GSE17782-TGFB3 GSE17782 TGFB3 Adipose-derived mesenchymal stem cells stem cell Human Differential expression 0-336
E-MTAB-2091-EGF E-MTAB-2091 EGF Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-IFNG IFNG Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-IL1B IL1B Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-IL4 IL4 Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-INS INS Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-TGFA TGFA Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-TNF TNFA Bronchial epithelial cells epithelial Human Differential expression 0-6
E-MTAB-2091-PROK2 PROK2 Bronchial epithelial cells epithelial Human Differential expression 0-6
GSE19098-VEGFA(1) GSE19098 VEGFA Umbilical vein endothelial cells (spreaded) endothelial Human Differential expression 0-2
GSE19098-VEGFA(2) VEGFA Umbilical vein endothelial cells (restricted) endothelial Human Differential expression 0-2
GSE43955-IL6+TGFB1 GSE43955 TGFB1 + IL6 Th17 cells immune Mouse Time series 0-1-4-10-20
GSE6789-IL1B GSE6789 Il1b Mouse embryonic fibroblast fibroblast Mouse Differential expression 0-4
GSE72791-IL12B GSE72791 Il12b CD8 T cells immune Mouse Differential expression 0-4
GSE72791-IL12B+IL33 Il12b+Il33 CD8 T cells immune Mouse Differential expression 0-4
GSE31193-IFNL3 GSE31193 IFNL3 hepatocyte hepatocyte Human Time series 0-6-24
GSE31193-IFNA1 IFNA1 hepatocyte hepatocyte Human Time series 0-6-24
GSE23952-TGFB1 GSE23952 TFGB1 Panc-1 pancreatic adenocarcinoma cell line carcinoma Human Differential expression 0-48
GSE26834-IGF1 GSE26834 IGF1 MCF-7 epithelial Human Time series 0-3-24
GSE36287-TNF GSE36287 TNF Keratinocytes keratinocyte Human Differential expression UNK
GSE36287-IFNG IFNG Keratinocytes keratinocyte Human Differential expression UNK
GSE36287-IL4 IL4 Keratinocytes keratinocyte Human Differential expression UNK
GSE36287-IFNA1 IFNA1 Keratinocytes keratinocyte Human Differential expression UNK
GSE36287-IL17A IL17A Keratinocytes keratinocyte Human Differential expression UNK
GSE2120-GH1 GSE2120 Gh1 3T3-F442A adipocytes adipocyte Mouse Time series 0-0.5-4-48
GSE1791-NMU GSE1791 Nmu T cells immune Mouse Time series 0-0.8-3-6-12
GSE68164-TGFB1 GSE68164 TGFB1 Prostate fibroblasts fibroblast Human Differential expression 0-24
GSE17708-TGFB1 GSE17708 TGFB1 A549 lung epithelial/adenocarcinoma cell line carcinoma Human Differential expression 0-24
GSE2059-IL15 GSE2059 Il15 CD8 T-cells immune Mouse Differential expression 0-4
GSE2059-IL21 Il21 CD8 T-cells immune Mouse Differential expression 0-4
GSE2059-IL15+IL21 Il15+Il21 CD8 T-cells immune Mouse Differential expression 0-4
GSE6085-IL2 GSE6085 Il2 CD8 T-cells immune Mouse Time series 0-0.5-1-2-4-6-8-10-12-16-24
GSE59184-IL4 GSE59184 IL4 PBMC immune Human Time series 0-6-24
GSE59184-IL10 IL10 PBMC immune Human Time series 0-6-24
GSE59184-IL15 IL15 PBMC immune Human Time series 0-6-24
GSE7561-IGF1 GSE7561 IGF1 MCF7 epithelial Human Time series 0-3-24
GSE43700-IL10 GSE43700 IL10 PBMC immune Human Differential expression 0-24
GSE16416-TGFB1 GSE16416 TGFB1 primary fibroblasts fibroblast Human Differential expression 0-2
GSE26656-WNT1(1) GSE26656 WNT1 A375 melanoma melanoma Human Differential expression control vs WNT1 transfection
GSE26656-WNT1(2) WNT1 M24met melanoma melanoma Human Differential expression control vs WNT1 transfection
GSE32199-BMP2 GSE32199 Bmp2 mouse extraembryonic endoderm endoderm Mouse Differential expression 0-144
GSE14256-PDGFB GSE14256 PDGFB Fibroblast fibroblast Human Time series 0-1-24
GSE14256-FGF2 FGF2 Fibroblast fibroblast Human Time series 0-1-24
GSE58203-IL1B GSE58203 IL1B Synovial fibroblast fibroblast Human Time series 0-1-2-4-12
GSE58203-PDGFD PDGFD Synovial fibroblast fibroblast Human Time series 0-1-2-4-12
GSE10315-BMP2 GSE10315 BMP2 Mesenchymal stem cells stem cell Human Time series 0-24-72
GSE10315-TGFB3 TGFB3 Mesenchymal stem cells stem cell Human Time series 0-24-72
GSE29316-SHH GSE29316 SHH Colon fibroblast fibroblast Human Differential expression 0-72
GSE42565-SHH GSE42565 Shh neural embryoid neural embryoid Mouse Differential expression 0-72
GSE4936-SHH GSE4936 Shh neural embryoid neural embryoid Mouse Differential expression 0-72
GSE27455-WNT3A GSE27455 Wnt3a embryonic stem cells stem cell Mouse Differential expression 0-24
GSE9169-BDNF(1) GSE9169 BDNF neuroblastoma cell line neuroblastoma Human Time series 0-6-24
GSE9169-BDNF(2) BDNF neuroblastoma cell line neuroblastoma Human Time series 0-6-24
GSE10311-BMP2 GSE10311 BMP2 Osteoblast osteoblast Human Time series 0-2-24
GSE69639-TNF(1) GSE69639 TNF HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-TNF(2) TNF HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-EGF EGF HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-TNF+EGF (1) TNF+EGF HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-TNF+INS (1) TNF+INS HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-TNF+EGF (2) TNF+EGF HT-29 cells carcinoma Human Time series 0-4-8-16
GSE69639-TNF+INS (2) TNF+INS HT-29 cells carcinoma Human Time series 0-4-8-16
GSE60880-TGFB1 GSE60880 TGFB1 Lung fibroblasts fibroblast Human Differential expression 0-8
GSE60880-EGF EGF Lung fibroblasts fibroblast Human Time series 0-0.5-1-2-8
GSE60880-IL1B IL1B Lung fibroblasts fibroblast Human Time series 0-0.5-1-2-8
GSE32975-EGF GSE32975 EGF immortalized keratinocytes keratinocyte Human Differential expression 0-4
GSE32975-TNF TNF immortalized keratinocytes keratinocyte Human Differential expression 0-4
GSE20854-EGF GSE20854 EGF endometrial carcinoma carcinoma Human Time series 0-12-24
GSE32423-IL4 GSE32423 IL4 CD8 T cells immune Mouse Differential expression 0-20
GSE32423-IL4+IL7 IL4+IL7 CD8 T cells immune Mouse Differential expression 0-20